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[ DevCourseWeb.com ] Udemy - Bioinformatics; Learn Docking and Mol Dynamics Simulation

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DevCourseWeb com Udemy - Bioinformatics; Learn Docking and Mol Dynamics Simulation

文件列表
  1. ~Get Your Files Here !/01 - Important Massage Before Start of The Course/001 Important Massage from Instructors.mp44.26MB
  2. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/001 What is Protein.mp451.3MB
  3. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/002 Experimental Techniques to Determine 3D Structure of Protein.mp44.59MB
  4. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/003 Practical-1 How To Download Protein Structure From Protein Databank.mp490MB
  5. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/004 Practical-2 Visualization of 3D Structure of Protein Using Pymol.mp435.58MB
  6. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/005 Fixing the Missing Residues in Protein 3D Structure Downloaded.mp416.03MB
  7. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/006 Practical-3 Fixing Missing Residues Issue With Modeller.mp4102.1MB
  8. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/007 Intro to Protein 3D Structure Prediction.mp42.41MB
  9. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 Modeller-access-in-MAC.mp49.45MB
  10. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 Practical-4 How to Predict 3D Structure Using Modeller (Homology).mp4259.72MB
  11. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/009 Practical-5 How to Use I-TASSER for Prediction of 3D Structure.mp4121.93MB
  12. ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/010 Practical-6 Introduction of Alpha-Fold Database and Alpha-Fold Colab.mp428.86MB
  13. ~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/001 Basic Introduction of Molecular Dynamic Simulations and its Steps.mp414.92MB
  14. ~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/002 Basic Theory of Molecular Dynamics Simulation (Part-1).mp44.97MB
  15. ~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/003 Basic Theory of Molecular Dynamics Simulation (Part-2).mp47.43MB
  16. ~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/004 Basic Theory of Molecular Dynamics Simulation (Part-3).mp46.42MB
  17. ~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/005 Basic Theory of Molecular Dynamics Simulation (Part-4).mp45.99MB
  18. ~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/006 MD (Molecular Dynamics Simulation) Cycle.mp47.9MB
  19. ~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/007 Basic Steps of Molecular Dynamics Simulations.mp41.62MB
  20. ~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/008 Protein Structure Preparation for Molecular Dynamics Simulations.mp48.18MB
  21. ~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/009 Preparation of Topology File for Molecular Dynamics Simulations.mp45.29MB
  22. ~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/010 Solvation and Ionization of System.mp420.04MB
  23. ~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/011 Energy Minimization (EM) of System.mp42.74MB
  24. ~Get Your Files Here !/03 - Module-2 Theory of Molecular Dynamics Simulations/012 Equilibration and Production Phase of Molecular Dynamics Simulation.mp416.74MB
  25. ~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/001 Basic Type of Operating System Available in Market.mp44.17MB
  26. ~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/002 Features of Linux Operating System.mp44.77MB
  27. ~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/003 Terminal of Linux Operating System.mp41.5MB
  28. ~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/004 Some Basic Commands for Linux Operating System.mp426.76MB
  29. ~Get Your Files Here !/04 - Module 3 Computer Operating System Used for Molecular Dynamics Simulation/005 What's Next.mp44.23MB
  30. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/001 Practical-7 Installation of Linux in Windows Environment.mp430.3MB
  31. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/002 Practical-8 Installation of GROMACS.mp442.05MB
  32. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/003 Modules of GROMACS Used in Molecular Dynamics Tutorial.mp44.48MB
  33. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/004 Work Flow of Molecular Dynamics in GROMACS.mp415.05MB
  34. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/005 Practical-9 Creating Folder in Ubuntu For Molecular Dynamics Simulations.mp419.35MB
  35. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/006 Commands to Run Molecular Dynamics Simulations (For You).mp43.61MB
  36. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/007 Practical-10 Cleaning Protein Structure For Molecular Dynamics Simulations.mp416.6MB
  37. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/008 Practical-11 Creation of Topology File In GROMACS.mp449.44MB
  38. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/009 Practical-12 Solvation of Step in Molecular Dynamics Simulation.mp441.12MB
  39. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/010 Practical-13 Ionization Step in Molecular Dynamics Simulation.mp434MB
  40. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/011 Practical-14 Energy Minimization (EM) in GROMACS.mp448.54MB
  41. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/012 Practical-15 Equilibration Phase-I (Part-A).mp421.92MB
  42. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/013 Practical-16 Equilibration Phase-I (Part-B).mp414.98MB
  43. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/014 Practical-17 Equilibration Phase-II (Part-A).mp424.25MB
  44. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/015 Practical-18 Equilibration Phase-II (Part-B).mp414.56MB
  45. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/016 Understanding md.mdp File Before Final Phase.mp412.72MB
  46. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/017 Practical-19 Running Molecular Dynamics Simulation Final Phase.mp413.46MB
  47. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/018 Basic Theory of Molecular Dynamics Simulation Data Analysis.mp414.28MB
  48. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/019 Commands for Analysis of Molecular Dynamics Simulation Data.mp47.55MB
  49. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/020 Bringing the Protein in Center Before Data Analysis.mp48.1MB
  50. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/021 Practical-20 Calculation of RMSD.mp411.45MB
  51. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/022 Practical-21 Calculation of RMSF.mp410.84MB
  52. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/023 Practical-22 Calculation of Radius of Gyration (Rg).mp49.63MB
  53. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/024 Practical-23 Calculation of Total Number of Hydrogen bonds (Hb).mp46.78MB
  54. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/025 Practical-24 Calculation of Solvent Accessible Surface Area (SASA).mp422.56MB
  55. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/026 Practical-25 Opening of XVG Files in Excel.mp440.65MB
  56. ~Get Your Files Here !/05 - Module 4 Demonstration of MD Simulation of Protein in Water with GROMACS/027 Practical-25.1 Visualization of MD Trajectory in Pymol.mp436.54MB
  57. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/001 Introduction of Docking-Part-1.mp43.19MB
  58. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/002 Introduction of Docking-Part-2.mp43MB
  59. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/003 Sampling Algorithms-Part-1.mp41.91MB
  60. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/004 Sampling Algorithms-Part-2.mp41.65MB
  61. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/005 Sampling Algorithms-Part-3.mp416.36MB
  62. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/006 Sampling Algorithms-Part-4.mp47.88MB
  63. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/007 Scoring Algorithms.mp45.68MB
  64. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/008 Types of Docking.mp42.81MB
  65. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/009 Basic Steps in Docking Protocol.mp47.99MB
  66. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/010 Theory of Docking Steps-Part-1.mp47.04MB
  67. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/011 Theory of Docking Steps-Part-2.mp45.62MB
  68. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/012 Practical-26 Installation of MGL Tools, Vina, AutoDock4 & Autogrid.mp422.95MB
  69. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/013 Practical-27 Installation of Ligand Drawing Tools.mp412.66MB
  70. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/014 Practical-28 Downloading and Preparation of Protein 3D Structure for Docking.mp467.57MB
  71. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/015 Issue With Protein Structure Preparation in MGL Tools.mp46.93MB
  72. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/016 Practical-29 Downloading of Ligand 3D Structure from ZINC Database.mp433.43MB
  73. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/017 Practical-30 Drawing of Ligand Structure in ChemSketch.mp462.18MB
  74. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/018 Practical-31 Preparation of Ligand Molecule for Docking.mp454.51MB
  75. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/019 Practical-32 Prediction of Active Site of Protein.mp438.15MB
  76. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/020 Practical-33 Setting Grid.mp450.07MB
  77. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/021 Very Important Step; Be Careful Here.mp415.78MB
  78. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/022 Practical-34 (Part-A) Performing Docking with Vina.mp429.67MB
  79. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/023 Practical-34 (Part-B) Visualization of Vina Docking Data.mp424.59MB
  80. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/024 Practical-35 (Part-A) Performing Docking Using AutoDock4.mp483.01MB
  81. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/025 Practical-35 (Part-B) Visualization of AutoDock4 Docking Results.mp421.08MB
  82. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/026 Practical-33 Preforming Docking with CB Dock.mp426.43MB
  83. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/027 Practical-34 Analyzing the Docking Data.mp460.91MB
  84. ~Get Your Files Here !/06 - Module-5 Fundamentals of Molecular Docking (Theory & Practical)/028 Practical-35 PatchDock; Shape Complementary Docking Program.mp480.05MB
  85. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/001 Biggest Drawback of Conventional Docking Protocol.mp45.06MB
  86. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/002 Difference Between Simple MD Simulation Vs Protein-Ligand MD Simulations.mp41.37MB
  87. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/003 Basic Steps of Protein-Ligand MD Simulations.mp43.31MB
  88. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/004 Practical-36 Very First Step; Preparation of Protein and Ligand.mp429.94MB
  89. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/005 Practical-37 Necessary Files Needed For Molecular Dynamics Simulations.mp49.15MB
  90. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/006 Commands to Run Ligand-Protein Molecular Dynamics Simulations.mp42.97MB
  91. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/007 Practical-38 Preparation of Protein Topology File.mp431.66MB
  92. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/008 Practical-39 Preparation of Ligand Topology File.mp435.56MB
  93. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/009 Practical-40 Making Complex.mp440.89MB
  94. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/010 Practical-41 Solvation, Ionization & Energy Minimization of Complex.mp418.93MB
  95. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/011 Practical-42 Ligand Restrain.mp431.45MB
  96. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/012 Practical-43 Thermostats.mp48.44MB
  97. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/013 Practical-44 Equilibration.mp422.38MB
  98. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/014 Practical-44 Production Phase.mp418.79MB
  99. ~Get Your Files Here !/07 - Module-6 Molecular Dynamics Simulations of Protein-Ligand Docked Complex/015 Practical-44 Analysis.mp459.73MB
  100. ~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/001 Importance of Virtual Screening.mp423.26MB
  101. ~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/002 Introduction to Virtual Screening.mp416.96MB
  102. ~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/003 Fundamental Steps of Virtual Screening.mp46.5MB
  103. ~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/004 Commands Needed to Run Virtual Screening.mp41.59MB
  104. ~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/005 Practical-46 Installation of Open Babel and Auto-Dock Vina In Linux (Ubuntu).mp424.99MB
  105. ~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/006 Practical-47 Preparation of Protein Receptor for Virtual Screening.mp411.24MB
  106. ~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/007 Practical-48 Downloading of Thousands of Ligands in One Click.mp443.14MB
  107. ~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/008 Practical-49 Preparation of Ligands for Docking.mp424.93MB
  108. ~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/009 Practical-50 Setting Grid and Writing of Configuration File.mp47.22MB
  109. ~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/010 Practical-51 Docking of Ligands with Receptors in Vina.mp427.83MB
  110. ~Get Your Files Here !/08 - Module-7 Virtual Screening of Drugs/011 Practical-52 Analysis.mp411.95MB
  111. ~Get Your Files Here !/09 - Recent Updates in Structural Biology For MD and Docking/001 Protein Databank Update.mp446.14MB
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